454 whole genome shotgun sequencing of genomic DNA library '454-1789'... - SRA

SRX003399: 454 whole genome shotgun sequencing of genomic DNA library '454-1789' containing sample 'BROAD:SEQUENCING_SAMPLE:16672.0'
1 LS454 (454 GS FLX) run: 4,370 spots, 1.3M bases, 2.6Mb downloads

UUID: 6d604ba8-89cc-4762-bb2a-4cb2902c1571

Design: 15x fragment; 30x physical paired

Submitted by: Broad Institute (BI)

Study: Reference genome for Human Microbiome Project

PRJNA42529 • SRP001633 • All experiments • All runs

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<b><i>Desulfovibrio</i> sp. 3_1_syn3</b>. This genome will be used for comparative analysis.

Sample: Generic sample from Desulfovibrio sp. 3_1_syn3

SAMN00102966 • SRS002802 • All experiments • All runs

Organism: Desulfovibrio sp. 3_1_syn3

Library:

Name: 454-1789

Instrument: 454 GS FLX

Strategy: WGS

Source: GENOMIC

Selection: RANDOM

Layout: SINGLE

Spot descriptor:

barcode

Group tag	Basecalls
Kathmandu	TGTCGGAC

13 forward

Experiment attributes: (show all 5 attributes...) (hide...)

gssr_id: 16672.1

lsid: BROAD:SEQUENCING_SAMPLE:16672.1

material_type: Genomic DNA

project: G1751

work_request: 17632

Pipeline: show...hide...

Name	Step	Program	Version
base caller	2009-02-17 15:19:07.0	454BaseCaller	2.0.00.17

Runs: 1 run, 4,370 spots, 1.3M bases, 2.6Mb

Run	# of Spots	# of Bases	Size	Published
SRR136576	4,370	1.3M	2.6Mb	2011-03-23

ID:: 3564

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